I agree with those who state it will take a number of years before either CU or NU to win their respective conferences. championship.
Conventional wisdom puts the Huskers in front of the Buffs due to NU's better weight room, bigger stadium, more revenue, stronger college football-centric culture, and more existing depth on the roster.
But Nebraska is vulnerable. Lincoln in the styx, and doesn't necessarily appeal to the fertile Florida, California and Texas recruiting grounds. The Huskers can't fill it's rosters from within it's boarders. This one-time powerhouse has been eclipsed by powerhouses like Alabama, Oklahoma, Texas, and Florida, who have more direct access to high school talent, and a full decade of more revenue and championship brand equity. The conference change will cause the Nubs to rethink their recruiting pipelines. Nebraska has even fallen behind the likes if Boise, Utah and TCU simply based upon BCS appearances in recent years.
The Buffs are starting out in an even deeper hole, thanks to the futility of the DH era and the institutional smackdown resulting from the psuedo-scandal at the turn of the millennium. Similarly CU can't fill a roster with top D1 talent inside state boundaries. And the facilities in Boulder are on the skimpy side of the arms race. One major bright spot is, however, a conference allignment that brings CU closer to it's alumni and it's preferred recruiting grounds. The same cannot be said in Lincoln. Plus Boulder is postcard beautiful, with a setting that money can't replicate in the Big 10.
I suspect that a different and more timely question would involve coaching staff turnover. Which HC will be around longer; Bo Pelini in Nebraska, or Jon Embree?
At this point, I'm not holding my breath that either Pelini or Embree will be holding a big crystal trophy anytime soon.